Pipette robot

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Subject Author Date
Pipette robot psaffrey@googlemail.com 09-30-2008
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Posted by psaffrey@googlemail.com on September 30, 2008, 10:33 am


I'm looking for some advice on a hobby robotics project.

I'm a PhD computer scientist working in a biology lab as the computing
dogsbody. Among other things, we do microarray experiments, which
involve pipetting DNA fragments, antibodies and other additives into a
2d array of wells:

http://shop.arrayit.com/ProductImages/microplate/Microplate-Microarrays-600=
.jpg

This is currently done by hand - once each for each additive. It takes
ages and is very tedious. There are pipettes that do several wells at
once, but apparently they're not very reliable. There are also
commercial robots, but I'm told they're very large and expensive.

I wondered if I could build a lego robot to do the job, as much for
fun as anything else. I would build some sort of gantry, like a
loading crane you see at rail-freight stations and ports, and a
mounting for a pipette, then use servos to move along the rows,
possibly with some other error correcting mechanism.

I'm looking for some advice on equipment. I did a robotics course when
I was an undergraduate, using an MIT handyboard. These cost about £200
in the UK. I could also buy a Lego mindstorms kit, about £150, but I'm
not sure how ideal this is for the application. Also, I'd much rather
have a simple C compiler (as with the Handyboard) than the all-singing
Windows only graphical interface I'm guessing I'll find for the
Mindstorms device.

Does anybody have any advice on this?

Peter

Posted by on September 30, 2008, 12:06 pm


On Tue, 30 Sep 2008, psaffrey@googlemail.com wrote:

> Date: Tue, 30 Sep 2008 07:33:34 -0700 (PDT)
> Newsgroups: comp.robotics.misc
> Subject: Pipette robot
>
> I'm looking for some advice on a hobby robotics project.
> I'm a PhD computer scientist working in a biology lab as the computing
> dogsbody. Among other things, we do microarray experiments, which
> involve pipetting DNA fragments, antibodies and other additives into a
> 2d array of wells:
> http://shop.arrayit.com/ProductImages/microplate/Microplate-Microarrays-600.jpg
> This is currently done by hand - once each for each additive. It takes
> ages and is very tedious. There are pipettes that do several wells at
> once, but apparently they're not very reliable. There are also
> commercial robots, but I'm told they're very large and expensive.
> I wondered if I could build a lego robot to do the job, as much for
> fun as anything else. I would build some sort of gantry, like a
> loading crane you see at rail-freight stations and ports, and a
> mounting for a pipette, then use servos to move along the rows,
> possibly with some other error correcting mechanism.
> I'm looking for some advice on equipment. I did a robotics course when
> I was an undergraduate, using an MIT handyboard. These cost about ?200
> in the UK. I could also buy a Lego mindstorms kit, about ?150, but I'm
> not sure how ideal this is for the application. Also, I'd much rather
> have a simple C compiler (as with the Handyboard) than the all-singing
> Windows only graphical interface I'm guessing I'll find for the
> Mindstorms device.
> Does anybody have any advice on this?
> Peter

A couple of considerations:

If you're looking for open source tool chains etc. then you could do a lot
worse than Arduino/AVR with a couple of stepper drivers for the robotic
smarts (Google is your friend). An Arduino is available at about $USD 26
from hvwtech.ca -- tool chains are free (gcc or Wiring) ...

As for the gantry, you might be able to use ball-bearing drawer sliders to
build the framework much less expensively than with purchasing a
Mindstorms kit straight up ... as such, a local surplus house or home
building centre would have the parts lying around ...

given that you are likely in a sterile environment, you may not want to
use wood for the base/platform construction, and other materials should be
selected for their non-porous surface, and ability to clean/sterilize same
...

Similar projects would include the fab at home project, or any home build
gantry mill project (scaled down -- you don't need the torque, and likely
won't generate the same forces as metal cutting tools) ...

problems relate to pipette management (up/down/x/y/z) -- thumbwheel
presumeably ... will still need to be addressed, but a stepper with a
rubber wheel using friction could sort that out pretty simply ...

Sounds like fun -- good luck ...
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Posted by John Nagle on October 1, 2008, 12:52 pm


psaffrey@googlemail.com wrote:
> I'm looking for some advice on a hobby robotics project.
>
> I'm a PhD computer scientist working in a biology lab as the computing
> dogsbody. Among other things, we do microarray experiments, which
> involve pipetting DNA fragments, antibodies and other additives into a
> 2d array of wells:
>
> http://shop.arrayit.com/ProductImages/microplate/Microplate-Microarrays-600.jpg
>
> This is currently done by hand - once each for each additive. It takes
> ages and is very tedious. There are pipettes that do several wells at
> once, but apparently they're not very reliable. There are also
> commercial robots, but I'm told they're very large and expensive.

Take a look at some of the midrange lab robots:

http://www.strobotics.com/
May be overkill.
http://www.ijfisnar.com/
They specialize in small desktop liquid-dispensing robots.
http://www.robix.com
Less precise, old, but might be OK - based on R/C servos.

The low-end robots that use R/C servos usually can't position repeatably
enough to do this blind.

                    John Nagle


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